Transcript: RAD51-AS1:12

Basic information

LNCipedia transcript ID: RAD51-AS1:12 
LNCipedia gene ID: RAD51-AS1
Location (hg38): chr15:40686724-40695096
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 718 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000245849.2|ENST00000533146.1
Alternative gene names: TODRA


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.4858 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAD51-AS1:12 yes no no no

Available literature

  1. Gazy (2015), TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RAD51-AS1:12
5.0 RAD51-AS1:12
5.1 RAD51-AS1:12
5.2 RAD51-AS1:12