Transcript: RAD51-AS1:13

Basic information

LNCipedia transcript ID: RAD51-AS1:13 
LNCipedia gene ID: RAD51-AS1
RefSeq ID: NR_040058
Location (hg38): chr15:40693734-40695105
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1156 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_040058.1
Alternative gene names: RAD51-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.8516 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAD51-AS1:13 yes no no no

Available literature

  1. Gazy (2015), TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 RAD51-AS1:13
5.1 RAD51-AS1:13
5.2 RAD51-AS1:13