Transcript: RAD51-AS1:5

Basic information

LNCipedia transcript ID: RAD51-AS1:5 
HGNC Gene Symbol: RAD51-AS1    
HGNC Full Gene Name: RAD51 antisense RNA 1
Ensembl Gene ID: ENSG00000245849
Ensembl Transcript ID: ENST00000533146
Location (hg38): chr15:40686724-40695096
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 718 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533146; ENST00000533146.1; CTD-2339L15.1-004; OTTHUMT00000387930.1; NONHSAT041866; ENST00000533146.5
Alternative gene names: ENSG00000245849; CTD-2339L15.1; ENSG00000245849.2; OTTHUMG00000166119.3; RAD51-AS1; ENSG00000245849.6; TODRA


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4858 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAD51-AS1:5 yes no no no

Available literature

  1. Gazy (2015), TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM82A2-2:3
3.1 lnc-FAM82A2-2:3
4.0 RAD51-AS1:5
4.1 RAD51-AS1:5
5.0 RAD51-AS1:5
5.1 RAD51-AS1:5
5.2 RAD51-AS1:5