Transcript: RAPGEF4-AS1:2

Basic information

LNCipedia transcript ID: RAPGEF4-AS1:2 
LNCipedia gene ID: RAPGEF4-AS1
Location (hg38): chr2:172723190-172736206
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4621 bp
Exons: 4
Sources: Refseq - Dec 2014
Alternative transcript names: NR_026995
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.714 non-coding 
CPAT coding probability 17.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAPGEF4-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DLX2-5:4
4.0 RAPGEF4-AS1:2
4.1 RAPGEF4-AS1:2
5.0 RAPGEF4-AS1:2
5.1 RAPGEF4-AS1:2
5.2 RAPGEF4-AS1:2