Transcript: RAPGEF4-AS1:5

Basic information

LNCipedia transcript ID: RAPGEF4-AS1:5 
LNCipedia gene ID: RAPGEF4-AS1
RefSeq ID: NR_026995
Location (hg38): chr2:172723189-172736206
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4622 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026995.1
Alternative gene names: RAPGEF4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -70.714 non-coding 
CPAT coding probability 9.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAPGEF4-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 RAPGEF4-AS1:5
5.1 RAPGEF4-AS1:5
5.2 RAPGEF4-AS1:5