Transcript: RARA-AS1:2

Basic information

LNCipedia transcript ID: RARA-AS1:2 
LNCipedia gene ID: RARA-AS1
Location (hg38): chr17:40340869-40343136
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1788 bp
Exons: 3
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000501561
Alternative gene names: ENSG00000245085;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.8325 non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RARA-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GJD3-1:1
3.1 lnc-GJD3-1:2
4.0 RARA-AS1:2
4.1 RARA-AS1:2
5.0 RARA-AS1:2
5.1 RARA-AS1:2
5.2 RARA-AS1:2