Transcript: RARA-AS1:3

Basic information

LNCipedia transcript ID: RARA-AS1:3 
HGNC Gene Symbol: RARA-AS1    
HGNC Full Gene Name: RARA antisense RNA 1
Ensembl Gene ID: ENSG00000265666
Ensembl Transcript ID: ENST00000581080
RefSeq ID: NR_110861
Location (hg38): chr17:40340867-40343136
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1790 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000581080.1; CTD-2267D19.2-001; OTTHUMT00000447446.1; NONHSAT053539; NR_110861; NR_110861.1
Alternative gene names: ENSG00000265666.1; CTD-2267D19.2; OTTHUMG00000179631.1; RARA-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.8325 non-coding 
CPAT coding probability 3.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RARA-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GJD3-1:1
4.0 RARA-AS1:3
4.1 RARA-AS1:3
5.0 RARA-AS1:3
5.1 RARA-AS1:3
5.2 RARA-AS1:3