Transcript: RASSF8-AS1:6

Basic information

LNCipedia transcript ID: RASSF8-AS1:6 
HGNC Gene Symbol: RASSF8-AS1    
HGNC Full Gene Name: RASSF8 antisense RNA 1
Ensembl Gene ID: ENSG00000246695
Ensembl Transcript ID: ENST00000542086
Location (hg38): chr12:25954805-25959065
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 815 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542086; ENST00000542086.1; RP11-877E17.2-010; OTTHUMT00000402420.1; NONHSAT027379; ENST00000542086.5
Alternative gene names: ENSG00000246695; RP11-877E17.2; ENSG00000246695.3; OTTHUMG00000169126.2; RASSF8-AS1; ENSG00000246695.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.3023 non-coding 
CPAT coding probability 5.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RASSF8-AS1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BHLHE41-1:6
3.1 lnc-BHLHE41-2:5
4.0 RASSF8-AS1:6
4.1 RASSF8-AS1:6
5.0 RASSF8-AS1:6
5.1 RASSF8-AS1:6
5.2 RASSF8-AS1:6