Transcript: RB1-DT:20

Basic information

LNCipedia transcript ID: RB1-DT:20 
LNCipedia gene ID: RB1-DT
Location (hg38): chr13:48302286-48303695
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 417 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT033707
Alternative gene names: ncRNA-RB1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.4577 non-coding 
CPAT coding probability 11.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RB1-DT:20 no no no no

Available literature

  1. Musahl (2015), A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LPAR6-1:3
4.0 LINC00441:3
4.1 LINC00441:3
5.0 LINC00441:3
5.1 RB1-DT:9
5.2 RB1-DT:20