Transcript: RB1-DT:21

Basic information

LNCipedia transcript ID: RB1-DT:21 
HGNC Gene Symbol: RB1-DT    
HGNC Full Gene Name: RB1 divergent transcript
Ensembl Gene ID: ENSG00000231473
Ensembl Transcript ID: ENST00000433480
RefSeq ID: NR_046414
Location (hg38): chr13:48296513-48303661
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1143 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000433480; ENST00000433480.2; LINC00441-001; OTTHUMT00000044875.2; NONHSAT033704; NR_046414; NR_046414.1
Alternative gene names: ENSG00000231473; RP11-305D15.2; ENSG00000231473.2; LINC00441; OTTHUMG00000016896.2; ncRNA-RB1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.4577 non-coding 
CPAT coding probability 3.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RB1-DT:21 no no no no

Available literature

  1. Musahl (2015), A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LPAR6-1:1
3.1 lnc-LPAR6-1:1
4.0 LINC00441:4
4.1 LINC00441:4
5.0 LINC00441:4
5.1 RB1-DT:10
5.2 RB1-DT:21