Transcript: RB1-DT:22

Basic information

LNCipedia transcript ID: RB1-DT:22 
HGNC Gene Symbol: RB1-DT    
HGNC Full Gene Name: RB1 divergent transcript
Ensembl Gene ID: ENSG00000231473
Ensembl Transcript ID: ENST00000436963
Location (hg38): chr13:48302447-48303659
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 220 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436963; ENST00000436963.1; LINC00441-002; OTTHUMT00000044876.1
Alternative gene names: ENSG00000231473; RP11-305D15.2; ENSG00000231473.2; LINC00441; OTTHUMG00000016896.2; ncRNA-RB1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RB1-DT:22 no no no no

Available literature

  1. Musahl (2015), A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LPAR6-1:2
3.1 lnc-LPAR6-1:2
4.0 LINC00441:5
4.1 LINC00441:5
5.0 LINC00441:5
5.1 RB1-DT:11
5.2 RB1-DT:22