Transcript: RBM15-AS1:19

Basic information

LNCipedia transcript ID: RBM15-AS1:19 
HGNC Gene Symbol: RBM15-AS1    
HGNC Full Gene Name: RBM15 antisense RNA 1
Ensembl Gene ID: ENSG00000227963
Ensembl Transcript ID: ENST00000449169
RefSeq ID: NR_036595
Location (hg38): chr1:110286375-110339171
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2611 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000449169; ENST00000449169.1; RP5-1074L1.1-001; OTTHUMT00000031113.1; NONHSAT005107; NR_036595.1
Alternative gene names: ENSG00000227963; RP5-1074L1.1; ENSG00000227963.1; OTTHUMG00000011283.1; AL355488.1; LOC440600; RBM15-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.8323 non-coding 
CPAT coding probability 5.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RBM15-AS1:19 yes no no no

Available literature

  1. Tran (2016), The AS-RBM15 lncRNA enhances RBM15 protein translation during megakaryocyte differentiation., EMBO Rep.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC16A4-1:2
3.1 lnc-SLC16A4-1:1
4.0 lnc-SLC16A4-1:1
4.1 lnc-SLC16A4-1:1
5.0 lnc-SLC16A4-1:1
5.1 RBM15-AS1:3
5.2 RBM15-AS1:19