Transcript: RBM15-AS1:33

Basic information

LNCipedia transcript ID: RBM15-AS1:33 
LNCipedia gene ID: RBM15-AS1
Location (hg38): chr1:110313996-110314400
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 405 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT005108
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.7664 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RBM15-AS1:33 no no no no

Available literature

  1. Tran (2016), The AS-RBM15 lncRNA enhances RBM15 protein translation during megakaryocyte differentiation., EMBO Rep.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC16A4-2:1
4.0 lnc-SLC16A4-2:1
4.1 lnc-SLC16A4-1:16
5.0 lnc-SLC16A4-1:16
5.1 RBM15-AS1:17
5.2 RBM15-AS1:33