Transcript: RBM5-AS1:1

Basic information

LNCipedia transcript ID: RBM5-AS1:1 
LNCipedia gene ID: RBM5-AS1
Location (hg38): chr3:50099602-50100988
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1387 bp
Exons: 1
Sources: long non-coding rna db - lncrnadb.com
Alternative transcript names: EF470865.1
Alternative gene names: LUST; Je2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.1114 non-coding 
CPAT coding probability 4.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RBM5-AS1:1 yes no no no

Available literature

  1. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  2. Kraus (2015), Long non-coding RNA normalisers in human brain tissue., J Neural Transm (Vienna)
  3. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)
  4. Takahashi (2014), Extracellular vesicle-mediated transfer of long non-coding RNA ROR modulates chemosensitivity in human hepatocellular cancer., FEBS Open Bio
  5. Rintala-Maki (2009), Identification and characterisation of a novel antisense non-coding RNA from the RBM5 gene locus., Gene
  6. Sutherland (2000), LUCA-15-encoded sequence variants regulate CD95-mediated apoptosis., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MON1A-1:1
3.1 lnc-MON1A-1:1
4.0 RBM5-AS1:1
4.1 RBM5-AS1:1
5.0 RBM5-AS1:1
5.1 RBM5-AS1:1
5.2 RBM5-AS1:1