Transcript: RC3H1-IT1:2

Basic information

LNCipedia transcript ID: RC3H1-IT1:2 
HGNC Gene Symbol: RC3H1-IT1    
HGNC Full Gene Name: RC3H1 intronic transcript 1
Ensembl Gene ID: ENSG00000236535
Ensembl Transcript ID: ENST00000421851
Location (hg38): chr1:174009267-174016206
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 448 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000685; ENST00000421851.1; RC3H1-IT1-001; OTTHUMT00000084254.1; NONHSAT007718
Alternative gene names: XLOC_001095; linc-RC3H1-3; ENSG00000236535.1; RC3H1-IT1; OTTHUMG00000034823.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.5651 non-coding 
CPAT coding probability 18.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RC3H1-IT1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERPINC1-3:1
3.1 lnc-SERPINC1-3:1
4.0 RC3H1-IT1:2
4.1 RC3H1-IT1:2
5.0 RC3H1-IT1:2
5.1 RC3H1-IT1:2
5.2 RC3H1-IT1:2