Transcript: RCAN3AS:24

Basic information

LNCipedia transcript ID: RCAN3AS:24 
LNCipedia gene ID: RCAN3AS
Location (hg38): chr1:24496315-24500102
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 732 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001427; NONHSAT001646
Alternative gene names: XLOC_000743; linc-C1orf201-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.1897 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RCAN3AS:24 no no no no

Available literature

  1. Facchin (2011), Complexity of bidirectional transcription and alternative splicing at human RCAN3 locus., PLoS ONE
  2. Canaider (2010), Human RCAN3 gene expression and cell growth in endothelial cells., Int. J. Mol. Med.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf201-1:2
3.1 lnc-C1orf201-2:2
4.0 lnc-C1orf201-5:5
4.1 lnc-C1orf201-5:5
5.0 lnc-C1orf201-5:5
5.1 RCAN3AS:13
5.2 RCAN3AS:24