Transcript: RFPL1S:10

Basic information

LNCipedia transcript ID: RFPL1S:10 
LNCipedia gene ID: RFPL1S
Location (hg38): chr22:29437017-29442129
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5113 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000461286.1; RFPL1-AS1-001; OTTHUMT00000075364.4
Alternative gene names: ENSG00000225465.4; RFPL1-AS1; OTTHUMG00000030476.4; RFPL1-AS; NCRNA00006


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.81 non-coding 
CPAT coding probability 49.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RFPL1S:10 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP1B1-1:1
4.0 RFPL1S:10
4.1 RFPL1S:10
5.0 RFPL1S:10
5.1 RFPL1S:10
5.2 RFPL1S:10