Transcript: RFPL1S:11

Basic information

LNCipedia transcript ID: RFPL1S:11 
LNCipedia gene ID: RFPL1S
RefSeq ID: NR_002727
Location (hg38): chr22:29437015-29442129
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5115 bp
Exons: 1
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT084701; NR_002727; NR_002727.2
Alternative gene names: RFPL1-AS; NCRNA00006; RFPL1S


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.81 non-coding 
CPAT coding probability 49.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RFPL1S:11 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP1B1-1:10
4.0 RFPL1S:11
4.1 RFPL1S:11
5.0 RFPL1S:11
5.1 RFPL1S:11
5.2 RFPL1S:11