Transcript: RFPL1S:12

Basic information

LNCipedia transcript ID: RFPL1S:12 
LNCipedia gene ID: RFPL1S
Location (hg38): chr22:29441255-29441838
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 584 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000539579.1; RFPL1-AS1-201; NONHSAT084705
Alternative gene names: ENSG00000225465.4; RFPL1-AS1; OTTHUMG00000030476.4; ENSG00000225465.6; RFPL1S; RFPL1-AS; NCRNA00006


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.1615 non-coding 
CPAT coding probability 56.12% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RFPL1S:12 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP1B1-1:2
4.0 RFPL1S:12
4.1 RFPL1S:12
5.0 RFPL1S:12
5.1 RFPL1S:12
5.2 RFPL1S:12