Transcript: RFPL1S:14

Basic information

LNCipedia transcript ID: RFPL1S:14 
LNCipedia gene ID: RFPL1S
Ensembl Gene ID: ENSG00000282816
Ensembl Transcript ID: ENST00000634116
Location (hg38): chr22:29480220-29481113
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 343 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000634116.1
Alternative gene names: ENSG00000282816.1; AC000035.3; RFPL1-AS; NCRNA00006; AC000035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFPL1S:14 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-THOC5-4:1
4.1 RFPL1S:14
5.0 RFPL1S:14
5.1 RFPL1S:14
5.2 RFPL1S:14