Transcript: RFPL1S:2

Basic information

LNCipedia transcript ID: RFPL1S:2 
LNCipedia gene ID: RFPL1S
Location (hg38): chr22:29436829-29478175
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5608 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000461286.3
Alternative gene names: ENSG00000225465.6; RFPL1S; RFPL1-AS; NCRNA00006


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.81 non-coding 
CPAT coding probability 49.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RFPL1S:2 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP1B1-1:4
4.0 RFPL1S:2
4.1 RFPL1S:2
5.0 RFPL1S:2
5.1 RFPL1S:2
5.2 RFPL1S:2