Transcript: RFPL1S:20

Basic information

LNCipedia transcript ID: RFPL1S:20 
LNCipedia gene ID: RFPL1S
Location (hg38): chr22:29440852-29480889
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1916 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225465.6|FTMT28500014010.1
Alternative gene names: RFPL1-AS; NCRNA00006


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 446.4812 coding 
CPAT coding probability 38.34% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RFPL1S:20 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RFPL1S:20
5.0 RFPL1S:20
5.1 RFPL1S:20
5.2 RFPL1S:20