Transcript: RFPL1S:3

Basic information

LNCipedia transcript ID: RFPL1S:3 
HGNC Gene Symbol: RFPL1S    
HGNC Full Gene Name: RFPL1 antisense RNA 1
Ensembl Gene ID: ENSG00000225465
Ensembl Transcript ID: ENST00000461286
Location (hg38): chr22:29436534-29478175
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5903 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000461286.4
Alternative gene names: ENSG00000225465.8; RFPL1S; RFPL1-AS; NCRNA00006

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.81 non-coding 
CPAT coding probability 48.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RFPL1S:3 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 RFPL1S:3
4.1 RFPL1S:3
5.0 RFPL1S:3
5.1 RFPL1S:3
5.2 RFPL1S:3