Transcript: RFPL1S:6

Basic information

LNCipedia transcript ID: RFPL1S:6 
HGNC Gene Symbol: RFPL1S    
HGNC Full Gene Name: RFPL1 antisense RNA 1
Ensembl Gene ID: ENSG00000225465
Ensembl Transcript ID: ENST00000419368
Location (hg38): chr22:29471941-29478070
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419368.1; AC000035.3-001; OTTHUMT00000322096.1; NONHSAT084709
Alternative gene names: ENSG00000224381.1; AC000035.3; OTTHUMG00000151290.1; ENSG00000225465.6; RFPL1S; ENSG00000225465.8; RFPL1-AS; NCRNA00006

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.3589 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFPL1S:6 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THOC5-1:1
4.0 RFPL1S:6
4.1 RFPL1S:6
5.0 RFPL1S:6
5.1 RFPL1S:6
5.2 RFPL1S:6