Transcript: RFPL3S:10

Basic information

LNCipedia transcript ID: RFPL3S:10 
LNCipedia gene ID: RFPL3S
RefSeq ID: NR_104232
Location (hg38): chr22:32359906-32371264
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1140 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104232; NR_104232.1
Alternative gene names: RFPL3S


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.1526 non-coding 
CPAT coding probability 9.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFPL3S:10 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C22orf28-1:1
4.0 lnc-RFPL3-AS1-1:2
4.1 lnc-RFPL3-AS1-1:2
5.0 lnc-RFPL3-AS1-1:2
5.1 RFPL3S:3
5.2 RFPL3S:10