Transcript: RFPL3S:13

Basic information

LNCipedia transcript ID: RFPL3S:13 
HGNC Gene Symbol: RFPL3S    
HGNC Full Gene Name: RFPL3 antisense
Ensembl Gene ID: ENSG00000205853
Ensembl Transcript ID: ENST00000461833
Location (hg38): chr22:32360652-32363117
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 334 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT084964; ENST00000461833.1
Alternative gene names: ENSG00000205853.10; RFPL3S


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.1526 non-coding 
CPAT coding probability 10.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFPL3S:13 no no no no

Available literature

  1. Seroussi (1999), Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C22orf28-1:4
4.0 lnc-RFPL3-AS1-1:5
4.1 lnc-RFPL3-AS1-1:5
5.0 lnc-RFPL3-AS1-1:5
5.1 RFPL3S:8
5.2 RFPL3S:13