Transcript: RFX3-AS1:22

Basic information

LNCipedia transcript ID: RFX3-AS1:22 
LNCipedia gene ID: RFX3-AS1
Location (hg38): chr9:3656974-3665024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2236 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3729_chr9:3656973-3664950_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.2986 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:22 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC1A1-12:1
4.0 lnc-SLC1A1-12:1
4.1 RFX3-AS1:22
5.0 RFX3-AS1:22
5.1 RFX3-AS1:22
5.2 RFX3-AS1:22