Transcript: RFX3-AS1:8

Basic information

LNCipedia transcript ID: RFX3-AS1:8 
LNCipedia gene ID: RFX3-AS1
Location (hg38): chr9:3674546-3691814
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000427722; ENST00000427722.1; RP11-509J21.3-001; OTTHUMT00000051553.1; NONHSAT130033
Alternative gene names: ENSG00000235326; RP11-509J21.3; ENSG00000235326.1; OTTHUMG00000019459.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.9049 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:8 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC1A1-2:1
3.1 lnc-SLC1A1-4:1
4.0 RFX3-AS1:8
4.1 RFX3-AS1:8
5.0 RFX3-AS1:8
5.1 RFX3-AS1:8
5.2 RFX3-AS1:8