Transcript: RHOA-IT1:1

Basic information

LNCipedia transcript ID: RHOA-IT1:1 
HGNC Gene Symbol: RHOA-IT1    
HGNC Full Gene Name: RHOA intronic transcript 1
Ensembl Gene ID: ENSG00000235908
Ensembl Transcript ID: ENST00000428083
Location (hg38): chr3:49365145-49367006
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 517 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428083.1; RHOA-IT1-001; OTTHUMT00000346199.1; NONHSAT089690
Alternative gene names: ENSG00000235908.1; RHOA-IT1; OTTHUMG00000156844.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.0285 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RHOA-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPX1-1:1
4.0 RHOA-IT1:1
4.1 RHOA-IT1:1
5.0 RHOA-IT1:1
5.1 RHOA-IT1:1
5.2 RHOA-IT1:1