Transcript: RHOXF1-AS1:2

Basic information

LNCipedia transcript ID: RHOXF1-AS1:2 
HGNC Gene Symbol: RHOXF1-AS1    
HGNC Full Gene Name: RHOXF1 antisense RNA 1
Ensembl Gene ID: ENSG00000258545
Ensembl Transcript ID: ENST00000555831
Location (hg38): chrX:120120550-120127100
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555831.1; RP4-755D9.1-002; OTTHUMT00000411972.1; ENST00000555831.5
Alternative gene names: ENSG00000258545.1; RP4-755D9.1; OTTHUMG00000171158.1; ENSG00000258545.5; RHOXF1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.8552 non-coding 
CPAT coding probability 20.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RHOXF1-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHOXF2-1:2
4.0 RHOXF1-AS1:2
4.1 RHOXF1-AS1:2
5.0 RHOXF1-AS1:2
5.1 RHOXF1-AS1:2
5.2 RHOXF1-AS1:2