Transcript: RHPN1-AS1:3

Basic information

LNCipedia transcript ID: RHPN1-AS1:3 
HGNC Gene Symbol: RHPN1-AS1    
HGNC Full Gene Name: RHPN1 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000254389
Ensembl Transcript ID: ENST00000518049
Location (hg38): chr8:143366631-143368548
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1918 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518049.1; RHPN1-AS1-001; OTTHUMT00000381416.1
Alternative gene names: ENSG00000254389.1; RHPN1-AS1; OTTHUMG00000165005.1; ENSG00000254389.2; ENSG00000254389.3; MGC3113


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.9867 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RHPN1-AS1:3 no no no no

Available literature

  1. Lu (2017), The Long Non-Coding RNA RHPN1-AS1 Promotes Uveal Melanoma Progression., Int J Mol Sci
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOP1MT-1:1
4.0 RHPN1-AS1:3
4.1 RHPN1-AS1:3
5.0 RHPN1-AS1:3
5.1 RHPN1-AS1:3
5.2 RHPN1-AS1:3