Transcript: RMST:10

Basic information

LNCipedia transcript ID: RMST:10 
HGNC Gene Symbol: RMST    
HGNC Full Gene Name: rhabdomyosarcoma 2 associated transcript
Ensembl Gene ID: ENSG00000255794
Ensembl Transcript ID: ENST00000547996
Location (hg38): chr12:97492637-97493980
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 755 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547996; ENST00000547996.1; RMST-005; OTTHUMT00000407674.1; NONHSAT030098
Alternative gene names: ENSG00000255794; RMST; ENSG00000255794.2; OTTHUMG00000170148.1; ENSG00000255794.6; NCRMS; NCRNA00054; LINC00054; ENSG00000255794.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.5505 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RMST:10 no no no no

Available literature

  1. Briese (2016), Whole transcriptome profiling reveals the RNA content of motor axons., Nucleic Acids Res.
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  3. Chaudhry (2014), Small nucleolar RNA host genes and long non-coding RNA responses in directly irradiated and bystander cells., Cancer Biother. Radiopharm.
  4. Hudson (2014), The structure, function and evolution of proteins that bind DNA and RNA., Nat. Rev. Mol. Cell Biol.
  5. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget
  6. Guan (2013), Switching cell fate, ncRNAs coming to play., Cell Death Dis
  7. Ng (2013), The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis., Mol. Cell
  8. Ng (2012), Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors., EMBO J.
  9. Uhde (2010), Rmst is a novel marker for the mouse ventral mesencephalic floor plate and the anterior dorsal midline cells., PLoS ONE
  10. Chan (2002), Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NEDD1-3:4
3.1 lnc-NEDD1-4:4
4.0 RMST:10
4.1 RMST:10
5.0 RMST:10
5.1 RMST:10
5.2 RMST:10