Transcript: RMST:12

Basic information

LNCipedia transcript ID: RMST:12 
LNCipedia gene ID: RMST
Location (hg38): chr12:97523963-97527733
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3158 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT030100
Alternative gene names: NCRMS; NCRNA00054; LINC00054


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.2687 non-coding 
CPAT coding probability 2.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RMST:12 no no no no

Available literature

  1. Briese (2016), Whole transcriptome profiling reveals the RNA content of motor axons., Nucleic Acids Res.
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  3. Chaudhry (2014), Small nucleolar RNA host genes and long non-coding RNA responses in directly irradiated and bystander cells., Cancer Biother. Radiopharm.
  4. Hudson (2014), The structure, function and evolution of proteins that bind DNA and RNA., Nat. Rev. Mol. Cell Biol.
  5. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget
  6. Guan (2013), Switching cell fate, ncRNAs coming to play., Cell Death Dis
  7. Ng (2013), The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis., Mol. Cell
  8. Ng (2012), Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors., EMBO J.
  9. Uhde (2010), Rmst is a novel marker for the mouse ventral mesencephalic floor plate and the anterior dorsal midline cells., PLoS ONE
  10. Chan (2002), Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NEDD1-4:12
4.0 RMST:12
4.1 RMST:12
5.0 RMST:12
5.1 RMST:12
5.2 RMST:12