Transcript: RMST:18
Basic information
LNCipedia transcript ID: RMST:18
LNCipedia gene ID: RMST
Ensembl Gene ID:
ENSG00000258131
Ensembl Transcript ID:
ENST00000552238
Location (hg38): chr12:96985656-97185609
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 573 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552238.1; RP11-541G9.1-001; OTTHUMT00000407381.1; NONHSAT030080
Alternative gene names: ENSG00000258131.1; RP11-541G9.1; OTTHUMG00000170121.1; NCRMS; NCRNA00054; LINC00054; AC007656.1
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
RMST:18 | no | no | no | no |
Available literature
- Briese (2016), Whole transcriptome profiling reveals the RNA content of motor axons., Nucleic Acids Res.
- Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
- Chaudhry (2014), Small nucleolar RNA host genes and long non-coding RNA responses in directly irradiated and bystander cells., Cancer Biother. Radiopharm.
- Hudson (2014), The structure, function and evolution of proteins that bind DNA and RNA., Nat. Rev. Mol. Cell Biol.
- Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget
- Guan (2013), Switching cell fate, ncRNAs coming to play., Cell Death Dis
- Ng (2013), The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis., Mol. Cell
- Ng (2012), Human long non-coding RNAs promote pluripotency and neuronal differentiation by association with chromatin modifiers and transcription factors., EMBO J.
- Uhde (2010), Rmst is a novel marker for the mouse ventral mesencephalic floor plate and the anterior dorsal midline cells., PLoS ONE
- Chan (2002), Identification of a novel gene NCRMS on chromosome 12q21 with differential expression between rhabdomyosarcoma subtypes., Oncogene
LNCipedia transcript ID history
LNCipedia version | LNCipedia transcript ID |
---|---|
3.1 | lnc-NEDD1-3:1 |
4.0 | lnc-NEDD1-3:1 |
4.1 | RMST:18 |
5.0 | RMST:18 |
5.1 | RMST:18 |
5.2 | RMST:18 |