Transcript: RNASEH2B-AS1:2

Basic information

LNCipedia transcript ID: RNASEH2B-AS1:2 
LNCipedia gene ID: RNASEH2B-AS1
RefSeq ID: NR_046552
Location (hg38): chr13:50882378-50910712
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 625 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000454605.1; RNASEH2B-AS1-001; OTTHUMT00000045012.1; NONHSAT033870; NR_046552.1
Alternative gene names: ENSG00000233672.1; RNASEH2B-AS1; OTTHUMG00000016938.1; ENSG00000233672.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.0857 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNASEH2B-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DLEU7-1:1
4.0 RNASEH2B-AS1:2
4.1 RNASEH2B-AS1:2
5.0 RNASEH2B-AS1:2
5.1 RNASEH2B-AS1:2
5.2 RNASEH2B-AS1:2