Transcript: RNF139-AS1:3

Basic information

LNCipedia transcript ID: RNF139-AS1:3 
HGNC Gene Symbol: RNF139-AS1    
HGNC Full Gene Name: RNF139 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000245149
Ensembl Transcript ID: ENST00000530778
Location (hg38): chr8:124472810-124474576
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1767 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530778; ENST00000530778.1; RP11-383J24.5-003; OTTHUMT00000388737.1; NONHSAT128588
Alternative gene names: ENSG00000245149; RP11-383J24.5; ENSG00000245149.3; OTTHUMG00000165073.2; RNF139-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.9343 non-coding 
CPAT coding probability 37.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RNF139-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TATDN1-1:1
3.1 lnc-TATDN1-1:1
4.0 RNF139-AS1:3
4.1 RNF139-AS1:3
5.0 RNF139-AS1:3
5.1 RNF139-AS1:3
5.2 RNF139-AS1:3