Transcript: RNF144A-AS1:3

Basic information

LNCipedia transcript ID: RNF144A-AS1:3 
LNCipedia gene ID: RNF144A-AS1
Location (hg38): chr2:6912277-6918682
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2347 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000418970; ENST00000418970.1; AC017076.4-001; OTTHUMT00000323504.2
Alternative gene names: ENSG00000228203; AC017076.4; ENSG00000228203.1; OTTHUMG00000151701.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.013 non-coding 
CPAT coding probability 11.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNF144A-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-2:1
3.1 lnc-CMPK2-2:1
4.0 RNF144A-AS1:3
4.1 RNF144A-AS1:3
5.0 RNF144A-AS1:3
5.1 RNF144A-AS1:3
5.2 RNF144A-AS1:3