Transcript: RNF144A-AS1:6

Basic information

LNCipedia transcript ID: RNF144A-AS1:6 
LNCipedia gene ID: RNF144A-AS1
Location (hg38): chr2:6917032-6918679
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 588 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000437589; ENST00000437589.1; AC017076.4-002; OTTHUMT00000323505.2
Alternative gene names: ENSG00000228203; AC017076.4; ENSG00000228203.1; OTTHUMG00000151701.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.1117 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNF144A-AS1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-2:3
3.1 lnc-CMPK2-2:3
4.0 RNF144A-AS1:6
4.1 RNF144A-AS1:6
5.0 RNF144A-AS1:6
5.1 RNF144A-AS1:6
5.2 RNF144A-AS1:6