Transcript: RNF219-AS1:15

Basic information

LNCipedia transcript ID: RNF219-AS1:15 
LNCipedia gene ID: RNF219-AS1
Location (hg38): chr13:78578476-78607096
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 457 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000444769; NONHSAT034453
Alternative gene names: ENSG00000234377; RP11-52L5.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -311.8102 non-coding 
CPAT coding probability 10.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RNF219-AS1:15 yes no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLAIN1-4:1
3.1 lnc-SLAIN1-4:2
4.0 RNF219-AS1:15
4.1 RNF219-AS1:15
5.0 RNF219-AS1:15
5.1 RNF219-AS1:15
5.2 RNF219-AS1:15