Transcript: RORA-AS1:13

Basic information

LNCipedia transcript ID: RORA-AS1:13 
HGNC Gene Symbol: RORA-AS1    
HGNC Full Gene Name: RORA antisense RNA 1
Ensembl Gene ID: ENSG00000245534
Ensembl Transcript ID: ENST00000559203
Location (hg38): chr15:60520061-60547964
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 684 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559203.1; RP11-219B17.1-006; OTTHUMT00000416841.1; NONHSAT044222
Alternative gene names: ENSG00000245534.2; RP11-219B17.1; OTTHUMG00000172103.1; ENSG00000245534.6; RORA-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.1984 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RORA-AS1:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXB1-3:7
4.0 RORA-AS1:13
4.1 RORA-AS1:13
5.0 RORA-AS1:13
5.1 RORA-AS1:13
5.2 RORA-AS1:13