Transcript: RORA-AS1:5

Basic information

LNCipedia transcript ID: RORA-AS1:5 
LNCipedia gene ID: RORA-AS1
RefSeq ID: NR_120341
Location (hg38): chr15:60479178-60630639
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 695 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120341; NR_120341.1
Alternative gene names: ; RORA-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -123.8121 non-coding 
CPAT coding probability 16.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RORA-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXB1-3:12
4.0 RORA-AS1:5
4.1 RORA-AS1:5
5.0 RORA-AS1:5
5.1 RORA-AS1:5
5.2 RORA-AS1:5