Transcript: RPARP-AS1:11

Basic information

LNCipedia transcript ID: RPARP-AS1:11 
HGNC Gene Symbol: RPARP-AS1    
HGNC Full Gene Name: RPARP antisense RNA 1
Ensembl Gene ID: ENSG00000269609
Ensembl Transcript ID: ENST00000492465
Location (hg38): chr10:102449853-102456293
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1556 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000492465.2
Alternative gene names: ENSG00000269609.1; RP11-18I14.10; ENSG00000269609.5; RPARP-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.0648 non-coding 
CPAT coding probability 16.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RPARP-AS1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM180-1:10
4.0 RPARP-AS1:11
4.1 RPARP-AS1:11
5.0 RPARP-AS1:11
5.1 RPARP-AS1:11
5.2 RPARP-AS1:11