Transcript: RPARP-AS1:4

Basic information

LNCipedia transcript ID: RPARP-AS1:4 
LNCipedia gene ID: RPARP-AS1
RefSeq ID: NR_038938
Location (hg38): chr10:102449817-102456293
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1307 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT016118; NR_038938; NR_038938.1
Alternative gene names: ; RPARP-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.0648 non-coding 
CPAT coding probability 5.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RPARP-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM180-1:5
4.0 RPARP-AS1:4
4.1 RPARP-AS1:4
5.0 RPARP-AS1:4
5.1 RPARP-AS1:4
5.2 RPARP-AS1:4