Transcript: RPL34-AS1:13

Basic information

LNCipedia transcript ID: RPL34-AS1:13 
LNCipedia gene ID: RPL34-AS1
Location (hg38): chr4:108556101-108620395
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1180 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234492.4|ENST00000509984.1
Alternative gene names: FLJ37673; RP11-462C24.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -39.5712 non-coding 
CPAT coding probability 11.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RPL34-AS1:13 no no no no

Available literature

  1. Wang (2016), Long non-coding RNAs LOC285194, RP11-462C24.1 and Nbla12061 in serum provide a new approach for distinguishing patients with colorectal cancer from healthy controls., Oncotarget
  2. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  3. Zhao (2015), Long non-coding RNA Linc00152 is involved in cell cycle arrest, apoptosis, epithelial to mesenchymal transition, cell migration and invasion in gastric cancer., Cell Cycle
  4. Shi (2014), Low expression of novel lncRNA RP11-462C24.1 suggests a biomarker of poor prognosis in colorectal cancer., Med. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RPL34-AS1:13
5.0 RPL34-AS1:13
5.1 RPL34-AS1:13
5.2 RPL34-AS1:13