Transcript: RPL34-AS1:6

Basic information

LNCipedia transcript ID: RPL34-AS1:6 
LNCipedia gene ID: RPL34-AS1
Location (hg38): chr4:108538190-108620397
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3711 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000450161; ENST00000450161.2; RPL34-AS1-201
Alternative gene names: ENSG00000234492; RP11-462C24.1; ENSG00000234492.3; RPL34-AS1; OTTHUMG00000161030.1; FLJ37673


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.938 non-coding 
CPAT coding probability 43.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RPL34-AS1:6 no no no no

Available literature

  1. Wang (2016), Long non-coding RNAs LOC285194, RP11-462C24.1 and Nbla12061 in serum provide a new approach for distinguishing patients with colorectal cancer from healthy controls., Oncotarget
  2. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  3. Zhao (2015), Long non-coding RNA Linc00152 is involved in cell cycle arrest, apoptosis, epithelial to mesenchymal transition, cell migration and invasion in gastric cancer., Cell Cycle
  4. Shi (2014), Low expression of novel lncRNA RP11-462C24.1 suggests a biomarker of poor prognosis in colorectal cancer., Med. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AGXT2L1-1:4
3.1 lnc-AGXT2L1-1:3
4.0 RPL34-AS1:6
4.1 RPL34-AS1:6
5.0 RPL34-AS1:6
5.1 RPL34-AS1:6
5.2 RPL34-AS1:6