Transcript: RPS6KA2-AS1:3

Basic information

LNCipedia transcript ID: RPS6KA2-AS1:3 
LNCipedia gene ID: RPS6KA2-AS1
Location (hg38): chr6:166900646-166908159
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5157 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_3322_chr6:167314133-167321259_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.6882 non-coding 
CPAT coding probability 52.19% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RPS6KA2-AS1:3 no no no no

Available literature

  1. Monti (2009), In silico prediction and experimental validation of natural antisense transcripts in two cancer-associated regions of human chromosome 6., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGFR1OP-1:4
4.0 RPS6KA2-AS1:3
4.1 RPS6KA2-AS1:3
5.0 RPS6KA2-AS1:3
5.1 RPS6KA2-AS1:3
5.2 RPS6KA2-AS1:3