Transcript: RPS6KA2-IT1:1

Basic information

LNCipedia transcript ID: RPS6KA2-IT1:1 
HGNC Gene Symbol: RPS6KA2-IT1    
HGNC Full Gene Name: RPS6KA2 intronic transcript 1
Ensembl Gene ID: ENSG00000232082
Ensembl Transcript ID: ENST00000416770
RefSeq ID: NR_046793
Location (hg38): chr6:166460663-166465383
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 579 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000416770.1; RPS6KA2-IT1-001; OTTHUMT00000106418.1; NONHSAT116051; NR_046793; NR_046793.1
Alternative gene names: ENSG00000232082.1; RPS6KA2-IT1; OTTHUMG00000046164.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.3196 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RPS6KA2-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRP44L-1:1
4.0 RPS6KA2-IT1:1
4.1 RPS6KA2-IT1:1
5.0 RPS6KA2-IT1:1
5.1 RPS6KA2-IT1:1
5.2 RPS6KA2-IT1:1