Transcript: RTCA-AS1:4

Basic information

LNCipedia transcript ID: RTCA-AS1:4 
LNCipedia gene ID: RTCA-AS1
Location (hg38): chr1:100263307-100266119
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2160 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001608; NONHSAT004783
Alternative gene names: XLOC_000939; linc-DBT-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.6603 non-coding 
CPAT coding probability 4.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RTCA-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DBT-1:2
3.1 lnc-DBT-1:2
4.0 RTCA-AS1:4
4.1 RTCA-AS1:4
5.0 RTCA-AS1:4
5.1 RTCA-AS1:4
5.2 RTCA-AS1:4