Transcript: RUNX1-IT1:1

Basic information

LNCipedia transcript ID: RUNX1-IT1:1 
LNCipedia gene ID: RUNX1-IT1
Location (hg38): chr21:35037936-35039426
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1491 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT081904; NR_026812
Alternative gene names: FLJ20856


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.4696 non-coding 
CPAT coding probability 31.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RUNX1-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RCAN1-7:1
4.0 RUNX1-IT1:1
4.1 RUNX1-IT1:1
5.0 RUNX1-IT1:1
5.1 RUNX1-IT1:1
5.2 RUNX1-IT1:1