Transcript: RUNX2-AS1:19

Basic information

LNCipedia transcript ID: RUNX2-AS1:19 
LNCipedia gene ID: RUNX2-AS1
Location (hg38): chr6:45576032-45665811
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1330 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT112992
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 198.7852 coding 
CPAT coding probability 5.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RUNX2-AS1:19 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUPT3H-1:14
4.0 lnc-SUPT3H-1:14
4.1 lnc-SUPT3H-1:14
5.0 lnc-SUPT3H-1:14
5.1 RUNX2-AS1:3
5.2 RUNX2-AS1:19